TypeError:必须是没有空字节的字符串,不是str
我试图运行这个代码,对每一帧我都有相同的命令(几乎没有变化):
traj.reset()
import os
#os.chdir(outname)
for i, frame in enumerate(traj):
frame.superpose()
comando = "python hollow.py -c constraint -o hollow_%s.pdb urei%s.pdb" % (i, i)
os.system(comando)
pml_cmd = "pymol urei%s.pdb hollow_%s.pdb -c -d 'as cartoon, urei%s;color gray90, urei%s;center chain A;set_view (-0.605158150,0.089404292,0.791067421, .795849979,0.093013920,0.598304033,-0.020089993,0.991641700,-0.127439827, .000000000,0.000000000,-202.017959595,-28.771762848,-7.683309555,10.745590210,-568.485290527,972.520690918,-20.000000000);bg white;as sphere, hollow_%s;color cyan, hollow_%s;ray;save urei%s.png' " % (i, i, i, i, i, i, i)
os.system(pml_cmd)
#remove = "rm urei%s.pdb hollow_%s.pdb" % (i, i)
#os.system(remove)
os.chdir("../")
我运行这个,我得到这个错误:
TypeError Traceback (most recent call last)
<ipython-input-8-53cd3e7bd107> in <module>()
7 os.system(comando)
8 pml_cmd = "pymol urei%s.pdb hollow_%s.pdb -c -d 'as cartoon, urei%s;color gray90, urei%s;center chain A;set_view (-0.605158150,0.089404292,0.791067421, .795849979,0.093013920,0.598304033,-0.020089993,0.991641700,-0.127439827, .000000000,0.000000000,-202.017959595,-28.771762848,-7.683309555,10.745590210,-568.485290527,972.520690918,-20.000000000);bg white;as sphere, hollow_%s;color cyan, hollow_%s;ray;save urei%s.png' " % (i, i, i, i, i, i, i)
----> 9 os.system(pml_cmd)
10 #remove = "rm urei%s.pdb hollow_%s.pdb" % (i, i)
11 #os.system(remove)
TypeError: must be string without null bytes, not str
我在网上搜索,但我找不到一个好的答案。
问题是 char应该被双重转义,即改为“”或者在字符串删除之前添加一个“r”:
pml_cmd = r“pymol urei%s.pdb ...”
你会得到这个特定的错误,因为在字符串的某处有一个 0,它被解释为一个NULL字符
我能够通过评论print
来解决这个错误:
for tarfileobj in inputs:
# print(tarfileobj)
tarfileobj.extractall(path=t, members=None)
我可以完成print(tarfileobj.split)
或打印repr
或删除了