WebAPI mixed authentication with OWIN Tokens and windows authentication

I am looking for a way to combine Windows Authentication and Identity/token based authentication. I have a Web API that currently uses OWIN to authenticate with Bearer tokens via the /token path and the ASP Membership database. The application that currently accesses this is external and will use a login form to log in.

The second administration application will be internal and I would like to utilize the same Web API RestFul service and allow windows authentication to it.

Is there a way to allow OWIN to allow both options for authentication? or do I need to do the Windows Authentication in another layer and have that layer call the WebAPI with a token?

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