How to do a basic left outer join with data.table in R?
I have a data.table of a and b that I've partitioned into below with b < .5 and above with b > .5:
DT = data.table(a=as.integer(c(1,1,2,2,3,3)), b=c(0,0,0,1,1,1))
above = DT[DT$b > .5]
below = DT[DT$b < .5, list(a=a)]
I'd like to do a left outer join between above and below : for each a in above , count the number of rows in below . This is equivalent to the following in SQL:
with dt as (select 1 as a, 0 as b union select 1, 0 union select 2, 0 union select 2, 1 union select 3, 1 union select 3, 1),
above as (select a, b from dt where b > .5),
below as (select a, b from dt where b < .5)
select above.a, count(below.a) from above left outer join below on (above.a = below.a) group by above.a;
a | count
---+-------
3 | 0
2 | 1
(2 rows)
How do I accomplish the same thing with data.tables? This is what I tried so far:
> key(below) = 'a'
> below[above, list(count=length(b))]
a count
[1,] 2 1
[2,] 3 1
[3,] 3 1
> below[above, list(count=length(b)), by=a]
Error in eval(expr, envir, enclos) : object 'b' not found
> below[, list(count=length(a)), by=a][above]
a count b
[1,] 2 1 1
[2,] 3 NA 1
[3,] 3 NA 1
I should also be more specific in that I already tried merge but that blows through the memory on my system (and the dataset takes only about 20% of my memory).
See if this is giving you something useful. Your example is too sparse to let me know what you want, but it appears it might be a tabulation of values of above$a that are also in below$a
table(above$a[above$a %in% below$a])
If you also want the converse ... values not in below , then this would do it:
table(above$a[!above$a %in% below$a])
And you can concatenate them:
> c(table(above$a[above$a %in% below$a]),table(above$a[!above$a %in% below$a]) )
2 3
1 2
Generally table and %in% run in reasonably small footprints and are quick.
Since you appear to be using package data.table : check ?merge.data.table . I haven't used it, but it appears this might do what you want:
merge(above, below, by="a", all.x=TRUE, all.y=FALSE)
I think this is easier:
setkey(above,a)
setkey(below,a)
Left outer join:
above[below, .N]
regular join:
above[below, .N, nomatch=0]
full outer join with counts:
merge(above,below, all=T)[,.N, by=a]
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