A simple explanation of Naive Bayes Classification
I am finding it hard to understand the process of Naive Bayes, and I was wondering if someone could explain it with a simple step by step process in English. I understand it takes comparisons by times occurred as a probability, but I have no idea how the training data is related to the actual dataset.
Please give me an explanation of what role the training set plays. I am giving a very simple example for fruits here, like banana for example
training set---
round-red
round-orange
oblong-yellow
round-red
dataset----
round-red
round-orange
round-red
round-orange
oblong-yellow
round-red
round-orange
oblong-yellow
oblong-yellow
round-red
Your question as I understand is divided in two parts. One being you need more understanding for Naive Bayes classifier & second being the confusion surrounding Training set.
In general all of Machine Learning Algorithms need to be trained for supervised learning tasks like classification, prediction etc. or for unsupervised learning tasks like clustering.
By training it means to train them on particular inputs so that later on we may test them for unknown inputs (which they have never seen before) for which they may classify or predict etc (in case of supervised learning) based on their learning. This is what most of the Machine Learning techniques like Neural Networks, SVM, Bayesian etc. are based upon.
So in a general Machine Learning project basically you have to divide your input set to a Development Set (Training Set + Dev-Test Set) & a Test Set (or Evaluation set). Remember your basic objective would be that your system learns and classifies new inputs which they have never seen before in either Dev set or test set.
The test set typically has the same format as the training set. However, it is very important that the test set be distinct from the training corpus: if we simply reused the training set as the test set, then a model that simply memorized its input, without learning how to generalize to new examples, would receive misleadingly high scores.
In general, for an example, 70% can be training set cases. Also remember to partition the original set into the training and test sets randomly.
Now I come to your other question about Naive Bayes.
Source for example below : http://www.statsoft.com/textbook/naive-bayes-classifier
To demonstrate the concept of Naïve Bayes Classification, consider the example given below:
As indicated, the objects can be classified as either GREEN or RED . Our task is to classify new cases as they arrive, ie, decide to which class label they belong, based on the currently existing objects.
Since there are twice as many GREEN objects as RED , it is reasonable to believe that a new case (which hasn't been observed yet) is twice as likely to have membership GREEN rather than RED . In the Bayesian analysis, this belief is known as the prior probability. Prior probabilities are based on previous experience, in this case the percentage of GREEN and RED objects, and often used to predict outcomes before they actually happen.
Thus, we can write:
Prior Probability of GREEN : number of GREEN objects / total number of objects
Prior Probability of RED : number of RED objects / total number of objects
Since there is a total of 60 objects, 40 of which are GREEN and 20 RED , our prior probabilities for class membership are:
Prior Probability for GREEN : 40 / 60
Prior Probability for RED : 20 / 60
Having formulated our prior probability, we are now ready to classify a new object ( WHITE circle in the diagram below). Since the objects are well clustered, it is reasonable to assume that the more GREEN (or RED ) objects in the vicinity of X, the more likely that the new cases belong to that particular color. To measure this likelihood, we draw a circle around X which encompasses a number (to be chosen a priori) of points irrespective of their class labels. Then we calculate the number of points in the circle belonging to each class label. From this we calculate the likelihood:
From the illustration above, it is clear that Likelihood of X given GREEN is smaller than Likelihood of X given RED , since the circle encompasses 1 GREEN object and 3 RED ones. Thus:
Although the prior probabilities indicate that X may belong to GREEN (given that there are twice as many GREEN compared to RED ) the likelihood indicates otherwise; that the class membership of X is RED (given that there are more RED objects in the vicinity of X than GREEN ). In the Bayesian analysis, the final classification is produced by combining both sources of information, ie, the prior and the likelihood, to form a posterior probability using the so-called Bayes' rule (named after Rev. Thomas Bayes 1702-1761).
Finally, we classify X as RED since its class membership achieves the largest posterior probability.
I realize that this is an old question, with an established answer. The reason I'm posting is that is the accepted answer has many elements of k-NN (k-nearest neighbors), a different algorithm.
Both k-NN and NaiveBayes are classification algorithms. Conceptually, k-NN uses the idea of "nearness" to classify new entities. In k-NN 'nearness' is modeled with ideas such as Euclidean Distance or Cosine Distance. By contrast, in NaiveBayes, the concept of 'probability' is used to classify new entities.
Since the question is about Naive Bayes, here's how I'd describe the ideas and steps to someone. I'll try to do it with as few equations and in plain English as much as possible.
First, Conditional Probability & Bayes' Rule
Before someone can understand and appreciate the nuances of Naive Bayes', they need to know a couple of related concepts first, namely, the idea of Conditional Probability, and Bayes' Rule. (If you are familiar with these concepts, skip to the section titled Getting to Naive Bayes' )
Conditional Probability in plain English: What is the probability that something will happen, given that something else has already happened.
Let's say that there is some Outcome O. And some Evidence E. From the way these probabilities are defined: The Probability of having both the Outcome O and Evidence E is: (Probability of O occurring) multiplied by the (Prob of E given that O happened)
One Example to understand Conditional Probability:
Let say we have a collection of US Senators. Senators could be Democrats or Republicans. They are also either male or female.
If we select one senator completely randomly, what is the probability that this person is a female Democrat? Conditional Probability can help us answer that.
Probability of (Democrat and Female Senator)= Prob(Senator is Democrat) multiplied by Conditional Probability of Being Female given that they are a Democrat.
P(Democrat & Female) = P(Democrat) * P(Female | Democrat)
We could compute the exact same thing, the reverse way:
P(Democrat & Female) = P(Female) * P(Democrat | Female)
Understanding Bayes Rule
Conceptually, this is a way to go from P(Evidence| Known Outcome) to P(Outcome|Known Evidence). Often, we know how frequently some particular evidence is observed, given a known outcome. We have to use this known fact to compute the reverse, to compute the chance of that outcome happening, given the evidence.
P(Outcome given that we know some Evidence) = P(Evidence given that we know the Outcome) times Prob(Outcome), scaled by the P(Evidence)
The classic example to understand Bayes' Rule:
Probability of Disease D given Test-positive =
Prob(Test is positive|Disease) * P(Disease)
_______________________________________________________________
(scaled by) Prob(Testing Positive, with or without the disease)
Now, all this was just preamble, to get to Naive Bayes.
Getting to Naive Bayes'
So far, we have talked only about one piece of evidence. In reality, we have to predict an outcome given multiple evidence. In that case, the math gets very complicated. To get around that complication, one approach is to 'uncouple' multiple pieces of evidence, and to treat each of piece of evidence as independent. This approach is why this is called naive Bayes.
P(Outcome|Multiple Evidence) =
P(Evidence1|Outcome) * P(Evidence2|outcome) * ... * P(EvidenceN|outcome) * P(Outcome)
scaled by P(Multiple Evidence)
Many people choose to remember this as:
P(Likelihood of Evidence) * Prior prob of outcome
P(outcome|evidence) = _________________________________________________
P(Evidence)
Notice a few things about this equation:
base rates and they are a way to scale our predicted probabilities. How to Apply NaiveBayes to Predict an Outcome?
Just run the formula above for each possible outcome. Since we are trying to classify, each outcome is called a class and it has a class label. Our job is to look at the evidence, to consider how likely it is to be this class or that class, and assign a label to each entity. Again, we take a very simple approach: The class that has the highest probability is declared the "winner" and that class label gets assigned to that combination of evidences.
Fruit Example
Let's try it out on an example to increase our understanding: The OP asked for a 'fruit' identification example.
Let's say that we have data on 1000 pieces of fruit. They happen to be Banana , Orange or some Other Fruit . We know 3 characteristics about each fruit:
This is our 'training set.' We will use this to predict the type of any new fruit we encounter.
Type Long | Not Long || Sweet | Not Sweet || Yellow |Not Yellow|Total
___________________________________________________________________
Banana | 400 | 100 || 350 | 150 || 450 | 50 | 500
Orange | 0 | 300 || 150 | 150 || 300 | 0 | 300
Other Fruit | 100 | 100 || 150 | 50 || 50 | 150 | 200
____________________________________________________________________
Total | 500 | 500 || 650 | 350 || 800 | 200 | 1000
___________________________________________________________________
We can pre-compute a lot of things about our fruit collection.
The so-called "Prior" probabilities. (If we didn't know any of the fruit attributes, this would be our guess.) These are our base rates.
P(Banana) = 0.5 (500/1000)
P(Orange) = 0.3
P(Other Fruit) = 0.2
Probability of "Evidence"
p(Long) = 0.5
P(Sweet) = 0.65
P(Yellow) = 0.8
Probability of "Likelihood"
P(Long|Banana) = 0.8
P(Long|Orange) = 0 [Oranges are never long in all the fruit we have seen.]
....
P(Yellow|Other Fruit) = 50/200 = 0.25
P(Not Yellow|Other Fruit) = 0.75
Given a Fruit, how to classify it?
Let's say that we are given the properties of an unknown fruit, and asked to classify it. We are told that the fruit is Long, Sweet and Yellow. Is it a Banana? Is it an Orange? Or Is it some Other Fruit?
We can simply run the numbers for each of the 3 outcomes, one by one. Then we choose the highest probability and 'classify' our unknown fruit as belonging to the class that had the highest probability based on our prior evidence (our 1000 fruit training set):
P(Banana|Long, Sweet and Yellow)
P(Long|Banana) * P(Sweet|Banana) * P(Yellow|Banana) * P(banana)
= _______________________________________________________________
P(Long) * P(Sweet) * P(Yellow)
= 0.8 * 0.7 * 0.9 * 0.5 / P(evidence)
= 0.252 / P(evidence)
P(Orange|Long, Sweet and Yellow) = 0
P(Other Fruit|Long, Sweet and Yellow)
P(Long|Other fruit) * P(Sweet|Other fruit) * P(Yellow|Other fruit) * P(Other Fruit)
= ____________________________________________________________________________________
P(evidence)
= (100/200 * 150/200 * 50/200 * 200/1000) / P(evidence)
= 0.01875 / P(evidence)
By an overwhelming margin ( 0.252 >> 0.01875 ), we classify this Sweet/Long/Yellow fruit as likely to be a Banana.
Why is Bayes Classifier so popular?
Look at what it eventually comes down to. Just some counting and multiplication. We can pre-compute all these terms, and so classifying becomes easy, quick and efficient.
Let z = 1 / P(evidence). Now we quickly compute the following three quantities.
P(Banana|evidence) = z * Prob(Banana) * Prob(Evidence1|Banana) * Prob(Evidence2|Banana) ...
P(Orange|Evidence) = z * Prob(Orange) * Prob(Evidence1|Orange) * Prob(Evidence2|Orange) ...
P(Other|Evidence) = z * Prob(Other) * Prob(Evidence1|Other) * Prob(Evidence2|Other) ...
Assign the class label of whichever is the highest number, and you are done.
Despite the name, Naive Bayes turns out to be excellent in certain applications. Text classification is one area where it really shines.
Hope that helps in understanding the concepts behind the Naive Bayes algorithm.
Ram Narasimhan explained the concept very nicely here below is an alternative explanation through the code example of Naive Bayes in action
It uses an example problem from this book on page 351
This is the data set that we will be using 
In the above dataset if we give the hypothesis = {"Age":'<=30', "Income":"medium", "Student":'yes' , "Creadit_Rating":'fair'} then what is the probability that he will buy or will not buy a computer.
The code below exactly answers that question.
Just create a file called named new_dataset.csv and paste the following content.
Age,Income,Student,Creadit_Rating,Buys_Computer
<=30,high,no,fair,no
<=30,high,no,excellent,no
31-40,high,no,fair,yes
>40,medium,no,fair,yes
>40,low,yes,fair,yes
>40,low,yes,excellent,no
31-40,low,yes,excellent,yes
<=30,medium,no,fair,no
<=30,low,yes,fair,yes
>40,medium,yes,fair,yes
<=30,medium,yes,excellent,yes
31-40,medium,no,excellent,yes
31-40,high,yes,fair,yes
>40,medium,no,excellent,no
Here is the code the comments explains everything we are doing here! [python]
import pandas as pd
import pprint
class Classifier():
data = None
class_attr = None
priori = {}
cp = {}
hypothesis = None
def __init__(self,filename=None, class_attr=None ):
self.data = pd.read_csv(filename, sep=',', header =(0))
self.class_attr = class_attr
'''
probability(class) = How many times it appears in cloumn
__________________________________________
count of all class attribute
'''
def calculate_priori(self):
class_values = list(set(self.data[self.class_attr]))
class_data = list(self.data[self.class_attr])
for i in class_values:
self.priori[i] = class_data.count(i)/float(len(class_data))
print "Priori Values: ", self.priori
'''
Here we calculate the individual probabilites
P(outcome|evidence) = P(Likelihood of Evidence) x Prior prob of outcome
___________________________________________
P(Evidence)
'''
def get_cp(self, attr, attr_type, class_value):
data_attr = list(self.data[attr])
class_data = list(self.data[self.class_attr])
total =1
for i in range(0, len(data_attr)):
if class_data[i] == class_value and data_attr[i] == attr_type:
total+=1
return total/float(class_data.count(class_value))
'''
Here we calculate Likelihood of Evidence and multiple all individual probabilities with priori
(Outcome|Multiple Evidence) = P(Evidence1|Outcome) x P(Evidence2|outcome) x ... x P(EvidenceN|outcome) x P(Outcome)
scaled by P(Multiple Evidence)
'''
def calculate_conditional_probabilities(self, hypothesis):
for i in self.priori:
self.cp[i] = {}
for j in hypothesis:
self.cp[i].update({ hypothesis[j]: self.get_cp(j, hypothesis[j], i)})
print "nCalculated Conditional Probabilities: n"
pprint.pprint(self.cp)
def classify(self):
print "Result: "
for i in self.cp:
print i, " ==> ", reduce(lambda x, y: x*y, self.cp[i].values())*self.priori[i]
if __name__ == "__main__":
c = Classifier(filename="new_dataset.csv", class_attr="Buys_Computer" )
c.calculate_priori()
c.hypothesis = {"Age":'<=30', "Income":"medium", "Student":'yes' , "Creadit_Rating":'fair'}
c.calculate_conditional_probabilities(c.hypothesis)
c.classify()
output:
Priori Values: {'yes': 0.6428571428571429, 'no': 0.35714285714285715}
Calculated Conditional Probabilities:
{
'no': {
'<=30': 0.8,
'fair': 0.6,
'medium': 0.6,
'yes': 0.4
},
'yes': {
'<=30': 0.3333333333333333,
'fair': 0.7777777777777778,
'medium': 0.5555555555555556,
'yes': 0.7777777777777778
}
}
Result:
yes ==> 0.0720164609053
no ==> 0.0411428571429
Hope it helps in better understanding the problem
peace
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