Run R interactively from Rscript
I'm trying to start a shiny app or an interactive .Rmd document from an Rscript. However, all I get is a message
Listening on http://127.0.0.1:...
I believe this is because R is running in interactive mode (another post about this). How can I write the proper Rscript so that either of the following would work?
My script
#!/usr/bin/Rscript
## This
library(shiny)
runApp(appDir = "../app")
## Or this
## rmarkdown::run("Main.Rmd")
If I understand your question correctly, I was able to achieve this with littler, which I use in lieu of Rscript
for scripting tasks that revolve around R. I'm running CentOS 7, and based on the code in your question it looks like you are on a Unix-like machine, so installing littler should not be an issue. For minimal reproducibility, I used the default shiny application and shiny-based Rmarkdown templates provided by RStudio, saving them as testapp
(the project / application directory name) and testRMD.rmd
, respectively. Then, I have the following scripts:
testapp.r
#!/usr/bin/env r
shiny::runApp(
"~/tmp/delete/testapp",
port = 7088,
launch.browser = TRUE,
host = "127.0.0.1")
testRMD.r
#!/usr/bin/env r
rmarkdown::run(
file = "testRMD.rmd",
dir = "~/tmp/delete",
shiny_args = list(
port = 7088,
launch.browser = TRUE,
host = "127.0.0.1"))
Set the permissions for these files so they can be executed -
[nathan@nrussell R]$ chmod +x testapp.r testRMD.r
( chmod +u ...
should suffice, but regardless...), and you should be all set to run them from your terminal, etc...
[nathan@nrussell R]$ ./testapp.r
Loading required package: shiny
Listening on http://127.0.0.1:7088
[nathan@nrussell R]$ ./testRMD.r
Loading required package: shiny
Listening on http://127.0.0.1:7088
There is some additional command line output for the Rmd
file that I omitted, but I'm sure this could be suppressed easily if desired. Anyhow, this seems to be working properly - both the shiny application and Rmarkdown application are interactive, just as when launched from RStudio - but if you had something else in mind please clarify.
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